Issues

• Consolidate reference-data extras and standardize generic sequence/alignment work on Biotite

  openvax/orfdata#131 · Filter by author iskandr opened on Oct 26, 2026

• Curate host associations and virus-type hierarchy across the viral reference panel

  openvax/orfdata#104 · Filter by author iskandr opened on Oct 16, 2026
  2

• Add Merkel cell polyomavirus and SV40 coding references with distinct cancer evidence

  openvax/orfdata#98 · Filter by author iskandr opened on Oct 15, 2026

• Add HTLV-1 and GDC HIV coding references with source-defined translation paths

  openvax/orfdata#97 · Filter by author iskandr opened on Oct 15, 2026

• Import CMV coding references with explicit strain and annotation coverage

  openvax/orfdata#95 · Filter by author iskandr opened on Oct 15, 2026

• Add hepatitis-virus coding catalogues: GDC HBV/HCV and a separate HDV reference

  openvax/orfdata#96 · Filter by author iskandr opened on Oct 15, 2026

• Expand the viral CDS catalogue across GDC HPV types and qualified HPV lineages

  openvax/orfdata#93 · Filter by author iskandr opened on Oct 15, 2026

• Import source-qualified EBV and KSHV coding references with supported RNA splice paths

  openvax/orfdata#94 · Filter by author iskandr opened on Oct 15, 2026

• Roadmap: publish sequence-qualified viral coding references for cancer RNA and the GDC panel

  openvax/orfdata#91 · Filter by author iskandr opened on Oct 15, 2026
  1

• Validate native RibORF sequences and retain provenance before cross-reference placement

  openvax/orfdata#87 · Filter by author iskandr opened on Oct 15, 2026

• Link polyprotein and precursor ORFs to their processed protein products

  openvax/orfdata#67 · Filter by author iskandr opened on Oct 13, 2026

• Represent ORFs on source-defined, circular and other non-Ensembl RNAs

  openvax/orfdata#66 · Filter by author iskandr opened on Oct 13, 2026

• Represent recoded translation paths, readthrough and programmed frameshifts

  openvax/orfdata#65 · Filter by author iskandr opened on Oct 13, 2026

• Import IRES-supported extra ORFs and link their RNA initiation elements

  openvax/orfdata#63 · Filter by author iskandr opened on Oct 13, 2026

• Resolve missing human native RNA counts and deduplicate repeated atlas deposits

  openvax/orfdata#37 · Filter by author iskandr opened on Oct 12, 2026
  1

• Resolve CoPY standard-sequence mismatches and duplicate label-free target rows

  openvax/orfdata#34 · Filter by author iskandr opened on Oct 12, 2026

• Extract Pfizer canine peptide and protein-group evidence with bounded source access

  openvax/orfdata#23 · Filter by author iskandr opened on Oct 12, 2026

• Expand RNA context with parallel species adapters; track cat, cattle and rat coverage

  enhancement
  openvax/orfdata#22 · Filter by author iskandr opened on Oct 12, 2026

• Add optional PaxDb and ProteomicsDB abundance adapters with source-level provenance

  enhancement
  openvax/orfdata#21 · Filter by author iskandr opened on Oct 12, 2026

• Import canine DIA protein measurements and a genuinely paired RNA/protein study

  enhancement
  openvax/orfdata#20 · Filter by author iskandr opened on Oct 12, 2026

• Import CCLE, ProCan and CPTAC quantitative RNA/protein comparator cohorts

  enhancement
  openvax/orfdata#19 · Filter by author iskandr opened on Oct 12, 2026

• Add a release-pinned OpenProt adapter for multispecies alternative-ORF evidence

  enhancement
  openvax/orfdata#18 · Filter by author iskandr opened on Oct 12, 2026
  3

• Import direct quantitative microprotein studies with transcript and peptide mappings

  enhancement
  openvax/orfdata#17 · Filter by author iskandr opened on Oct 12, 2026

• Version and import the expanded GENCODE translated-ORF reference catalogue

  enhancement
  openvax/orfdata#16 · Filter by author iskandr opened on Oct 12, 2026
  1

• Add human and mouse absolute-abundance and turnover calibration datasets

  enhancement
  openvax/orfdata#14 · Filter by author iskandr opened on Oct 12, 2026