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Parallel Genomic Analysis Toolkit

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Name		Name	Last commit message	Last commit date
Hadoop-BAM		Hadoop-BAM
adam-core @ ca8adaa		adam-core @ ca8adaa
cli @ a52a371		cli @ a52a371
coverage-depth @ cb12770		coverage-depth @ cb12770
dataproc @ 4e10e7e		dataproc @ 4e10e7e
guacamole @ 3b25ce1		guacamole @ 3b25ce1
images		images
io @ 7a497aa		io @ 7a497aa
iterator @ ad51a88		iterator @ ad51a88
loci @ 13742d3		loci @ 13742d3
magic-rdds @ 761e050		magic-rdds @ 761e050
math @ 02f56ff		math @ 02f56ff
path-utils @ 2218937		path-utils @ 2218937
reads @ 00092f4		reads @ 00092f4
readsets @ aa61636		readsets @ aa61636
reference @ b925e95		reference @ b925e95
sbt-parent @ a0498a6		sbt-parent @ a0498a6
shapeless @ 2840142		shapeless @ 2840142
spark-bam @ 7ff7e93		spark-bam @ 7ff7e93
spark-tests @ a7945a2		spark-tests @ a7945a2
spark-util @ f0e823a		spark-util @ f0e823a
string-utils @ e7ece78		string-utils @ e7ece78
suffix-arrays @ 9ada96d		suffix-arrays @ 9ada96d
test-utils @ ff640c3		test-utils @ ff640c3
utils @ 01db46a		utils @ 01db46a
utils-cli @ 55b0dba		utils-cli @ 55b0dba
.gitignore		.gitignore
.gitmodules		.gitmodules
README.md		README.md
style.md		style.md

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Parallel Genomic Analysis Toolkit

Two applications:

guacamole: WIP somatic variant caller
coverage-depth: QC-focused analysis of genomic-read datasets

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Parallel Genomic Analysis Toolkit

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