Issues

• BABs should scaffold bidsignore

  enhancement
  PennLINC/babs#415 · Filter by author asmacdo opened on Sep 11, 2026

• Extend job_status.csv with information from sacct

  PennLINC/babs#410 · Filter by author yarikoptic opened on Sep 2, 2026
  

• Alternative to optional zipping -- establishing datalad run around singularity run

  PennLINC/babs#409 · Filter by author yarikoptic opened on Sep 2, 2026

• babs submit overwrites code/job_submit.csv, so still-pending tasks from an earlier array run the wrong subject/session

  PennLINC/babs#408 · Filter by author yibeichan opened on Aug 30, 2026

• Make RIAs properly "Remote" (as via ssh or other way)

  PennLINC/babs#401 · Filter by author yarikoptic opened on Aug 7, 2026
  2

• Modernize the slurm-docker-ci CI image off EOL CentOS 7 (giovtorres base archived)

  PennLINC/babs#388 · Filter by author asmacdo opened on Jul 6, 2026

• Faithful BIDS-inheritance staging test via a splice-point pre-hook

  PennLINC/babs#384 · Filter by author asmacdo opened on Jun 23, 2026

• Add dataset license option

  enhancement
  PennLINC/babs#379 · Filter by author asmacdo opened on May 22, 2026

• dataset_description requirements

  PennLINC/babs#373 · Filter by author djarecka opened on Apr 24, 2026
  1

• Change default raw BIDS input path from inputs/data/BIDS to a BIDS-spec-official location

  PennLINC/babs#371 · Filter by author asmacdo opened on Apr 24, 2026
  6

• Provide/contribute to GeneratedBy record and/or proper/fuller BEP028 PROV

  enhancement
  PennLINC/babs#370 · Filter by author yarikoptic opened on Apr 22, 2026

• RIAs should be optional, as any other git/git-annex remote could be used

  PennLINC/babs#357 · Filter by author asmacdo opened on Apr 2, 2026
  3

• babs merge incorrectly raises Exception "Unable to find file content for some file(s)"

  bug
  PennLINC/babs#355 · Filter by author tien-tong opened on Mar 27, 2026

• Subject/session-level git sparse-checkout is only applied to non-zipped inputs

  bug
  PennLINC/babs#350 · Filter by author tien-tong opened on Mar 19, 2026
  2

• Use/promote use of datalad's add-archive-content

  PennLINC/babs#343 · Filter by author yarikoptic opened on Mar 5, 2026
  3

• Add FAQ entry for what to do if you make a mistake in your YAML file

  documentation
  PennLINC/babs#342 · Filter by author tsalo opened on Mar 4, 2026

• Support git worktree

  enhancement
  PennLINC/babs#338 · Filter by author yarikoptic opened on Mar 2, 2026

• Allow containers subdataset to have a configurable path

  enhancement
  PennLINC/babs#329 · Filter by author asmacdo opened on Jan 29, 2026

• Feature Request: Use datalad containers-run

  enhancement
  PennLINC/babs#328 · Filter by author asmacdo opened on Jan 23, 2026
  1

• Feature Request: Make zipping optional

  enhancement
  PennLINC/babs#327 · Filter by author asmacdo opened on Jan 23, 2026
  8

• Question: Workflow for post-merge processing (e.g., MRIQC group stats)

  PennLINC/babs#326 · Filter by author asmacdo opened on Jan 23, 2026

• os.access() fails on NFSv4 filesystems

  bug
  PennLINC/babs#324 · Filter by author asmacdo opened on Jan 22, 2026

• FutureWarning: Deprecated downcasting behavior in pandas .fillna within babs.utils

  PennLINC/babs#319 · Filter by author tien-tong opened on Dec 9, 2025
  1

• babs init doesn't filter subjects based on the required files field of the container-config yaml

  bug
  PennLINC/babs#314 · Filter by author singlesp opened on Sep 17, 2025

• sbref is added to BIDS filter file when it can't be used

  bug
  PennLINC/babs#305 · Filter by author tsalo opened on May 29, 2025