Issues

• Research: qualify a shared large-script Docker transport

  agent-generated
  Open-Athena/biotasks#68 · Filter by author gonzalobenegas opened on Oct 26, 2026

• Research: measure broader historical PR yield for four partially assessed repositories

  agent-generated
  Open-Athena/biotasks#67 · Filter by author gonzalobenegas opened on Oct 26, 2026
  9

• Research: preserve or explicitly reject failing pytest subtest results

  agent-generated
  Open-Athena/biotasks#64 · Filter by author gonzalobenegas opened on Oct 25, 2026
  1

• Research: rebuild compiled project artifacts for the selected PR revision

  agent-generated
  Open-Athena/biotasks#60 · Filter by author gonzalobenegas opened on Oct 24, 2026
  3

• Research: verify the patched checkout is the code under test

  agent-generated
  Open-Athena/biotasks#56 · Filter by author gonzalobenegas opened on Oct 24, 2026
  6

• Epic: make pr_runtime validation unattended and reproducible

  agent-generated
  Open-Athena/biotasks#33 · Filter by author gonzalobenegas opened on Oct 23, 2026
  55

• Research: assess pr_runtime test selection and parser coverage

  agent-generated
  Open-Athena/biotasks#32 · Filter by author gonzalobenegas opened on Oct 23, 2026
  18

• Research: measure pr_runtime losses from timeouts and scheduling

  agent-generated
  Open-Athena/biotasks#29 · Filter by author gonzalobenegas opened on Oct 23, 2026
  19

• make sure to include https://github.com/scikit-bio/scikit-bio-tutorials

  Open-Athena/biotasks#22 · Filter by author gonzalobenegas opened on Oct 16, 2026

• Compare open vs. closed models as task authors

  Open-Athena/biotasks#20 · Filter by author gonzalobenegas opened on Oct 16, 2026

• Notebook-to-task generation through artifact reproduction

  agent-generated
  Open-Athena/biotasks#19 · Filter by author gonzalobenegas opened on Oct 9, 2026
  208

• Build and evaluate notebook-to-task pipeline v1 on ten diverse biology notebooks

  agent-generated
  Open-Athena/biotasks#18 · Filter by author gonzalobenegas opened on Oct 9, 2026
  3