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@EPPIcenter

EPPIcenter

A systems epidemiology approach to complex infectious disease dynamics: state-of-the-art data collection, molecular technologies, & computational analysis

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  1. dcifer dcifer Public

    Distance for Complex Infections: Fast Estimation of Relatedness (R package)

    C 8 5

  2. moire moire Public

    MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

    C++ 8 9

  3. flexfit flexfit Public

    Flexible format standard curve fitting and data processing (R package)

    R 2

  4. liinc-Ab-dynamics liinc-Ab-dynamics Public

    Source code and data for 'SARS-CoV-2 antibody magnitude and detectability are driven by disease severity, timing, and assay'

    R

  5. THEREALMcCOIL THEREALMcCOIL Public

    A Markov chain Monte Carlo method that estimates complexity of infection and population allele frequencies using SNP data obtained from Sequenom or similar types of SNP assays.

    C 7 8

  6. scale-it-2 scale-it-2 Public

    R 2

Repositories

Showing 10 of 40 repositories
  • mad4hatter-wdl Public

    Repo for conversion of mad4hatter pipeline

    EPPIcenter/mad4hatter-wdl's past year of commit activity
    WDL 1 1 0 0 Updated Oct 23, 2026
  • plasmotrack Public
    EPPIcenter/plasmotrack's past year of commit activity
    C++ 0 MIT 0 21 12 Updated Oct 23, 2026
  • sampledb3 Public
    EPPIcenter/sampledb3's past year of commit activity
    TypeScript 0 0 17 6 Updated Oct 23, 2026
  • ampseq-qc Public

    QC for targeted amplicon sequencing of Plasmodium.

    EPPIcenter/ampseq-qc's past year of commit activity
    Jupyter Notebook 4 GPL-3.0 2 5 1 Updated Oct 21, 2026
  • mad4hatter Public

    Pipeline to process Plasmodium amplicon sequencing data

    EPPIcenter/mad4hatter's past year of commit activity
    R 12 29 9 0 Updated Oct 7, 2026
  • copy-number-variation Public Forked from andres-ad/madh_utilities
    EPPIcenter/copy-number-variation's past year of commit activity
    Jupyter Notebook 0 2 6 0 Updated Sep 25, 2026
  • hmmibd-rs Public Forked from bguo068/hmmibd-rs

    An enhanced implementation of hmmIBD in Rust

    EPPIcenter/hmmibd-rs's past year of commit activity
    Rust 0 3 0 0 Updated Sep 16, 2026
  • moire Public

    MOI and Allele Frequency Recovery from Noisy Polyallelic Genetics Data

    EPPIcenter/moire's past year of commit activity
    C++ 8 GPL-3.0 9 15 1 Updated Sep 15, 2026
  • MicrohaplotypeGeoAssign Public

    A pipeline for assigning potential geographical locations for microhaplotype data

    EPPIcenter/MicrohaplotypeGeoAssign's past year of commit activity
    0 GPL-3.0 0 0 0 Updated Sep 14, 2026
  • FreqEstimationModel Public Forked from aimeertaylor/FreqEstimationModel

    R package for multi-SNP haplotype frequency estimation

    EPPIcenter/FreqEstimationModel's past year of commit activity
    R 0 2 0 0 Updated Sep 9, 2026
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